“International sharing of data and expertise is essential to increase the statistical robustness and medical relevance of our genomics studies in male infertility.”
Clinical Assessment of Infertility Genes
Advances in genetic testing result in the discovery of numerous novel genetic variants that may play a role in male infertility each year. To assist in this feedback of knowledge, the IMIGC continuously screens the clinical validity of gene to certain types of male infertility. Following the pioneering work published in Human Reproduction [May 2019] we submitted an update in 2021 published in Human Reproduction Update) and in the table below we present the assessment for each infertility gene made by our panel of experts.
It is the aim of this consortium to regularly review and publish our assessments in peer-review journals and display the results here for all to see.
Frequently asked questions:
Where can find the full list of assessed genes?
An interactive table show be found below in this page, but should it not be visible for whatever reason you can find the manuscript and associated data here or the entire table can be downloaded from here.
How was this scoring performed?
Scoring is performed by at least two independent reviewers according to the Smith et al. system and we classified genes into no evidence (<3 points), limited (3-8 points), moderate (9-12 points), strong (13-15 points) or definitive (>15 points), with of a maximum of 17 points.
Why do some genes have the classification “Unable to classify”?
For some genes the inheritance pattern remains unclear or suggests polygenic inheritance, the technical quality of the identification method was too poor or the exact variant information could not be retrieved.
When is the next release scheduled?
The next release is scheduled for 2025.
Spotted a mistake, what can I do?
Please contact us via this website or email a member of this consortium.
Improved Phenotypic Classification of Male Infertility
An increasing number of genes are being described in the context of non-syndromic male infertility. Linking the underlying genetic causes of non-syndromic male infertility with clinical data from patients is important to establish new genotype-phenotype correlations. This process can be facilitated by using universal nomenclature, but no standardized vocabulary is available in the field of non-syndromic male infertility. The International Male Infertility Genomics Consortium aimed at filling this gap, providing a standardized vocabulary containing nomenclature based on the Human Phenotype Ontology (HPO).
The “HPO tree” was substantially revised compared with the previous version and is based on the clinical work-up of infertile men, including physical examination and hormonal assessment. Some causes of male infertility can already be suspected based on the patient’s clinical history, whereas in other instances, a testicular biopsy is needed for diagnosis.
We assembled 49 HPO terms that are linked in a logical hierarchy and showed examples of morphological features of spermatozoa and testicular histology of infertile men with identified genetic diagnoses to describe the phenotypes. This work will help to record patients’ phenotypes systematically and facilitate communication between geneticists and andrologists.
Where can find the HPO decision tree?
The HPO tree can ve found below in this page, but should it not be visible for whatever reason you can find the manuscript and associated data here or the full-scale image can be downloaded from here.
Where can find the HPO terms and associated semen and testicular phenotypes descriptions?
This HPO tree can ve found below in this page, but should it not be visible for whatever reason you can find the manuscript and associated data here or the full-scale image can be downloaded from here.
List of CLINICAL ASSESSED INFERTILITY GENES – HOUSTON et AL 2021
HGNC gene name | Synonym(s) | Location | Disorder | Inheritance pattern in human | Type of infertility | Expected result semen analysis | Score | Conclusion | Score Sheets | Assessment |
---|---|---|---|---|---|---|---|---|---|---|
ABCA1 | 9q31.1 | Tangier disease; OMIM:205400 | AR | Syndromic infertility | Oligoasthenoteratozoospermia | 6 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
ABCG8 | GBD4, STSL, STSL1 | 2p21 | Non-obstructive azoospermia; OMIM:NA (PS258150) | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
ACE | DCP; ACE1; DCP1; CD143 | 17q23.3 | Oligozoospermia and azoospermia | Undetermined | Isolated infertility | Azoospermia, oligozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
ACR | 22q13.33 | Unexplained male infertility | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
ACTL7A | T-ACTIN2; Tact2; Testicular Secretory Protein Li 3 | 9q31.3 | Azoospermia and oligozoospermia | Undetermined | Isolated infertility | Azoospermia, oligozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
ACTL7B | TAKT1 | 9q31.3 | Azoospermia and oligozoospermia | AR | Isolated infertility | Azoospermia, oligozoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
ADAM20 | 14q24.2 | Fertilization failure | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
ADCY10 | N/A | 1q24.2 | Asthenozoospermia | AR | Syndromic infertility | Asthenozoospermia | 7.5 | Limited | Download | Houston et al. 2021 |
ADGRG2 | HE6; EDDM6; GPR64; CBAVDX; TM7LN2 | Xp22.13 | Congenital Bilateral Absence of the Vas Deferens; OMIM:300985 | XL | Isolated infertility | Azoospermia | 16 | Definitive | Download | Houston et al. 2021 |
AGFG1 | 2q36.3 | Globozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
AK7 | 14q32.2 | Multiple morphological abnormalities of the sperm flagella; OMIM:617965 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 6 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
AKAP2 | 9q31.3 | Kallmann syndrome; hypogonadotropic hypogonadism, delayed puberty, cryptorchidism, small testes | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
AKAP3 | 12p13.32 | Multiple morphological abnormalities of the sperm flagella; OMIM:NA (PS258150) | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
AKAP4 | Xp11.22 | Multiple morphological abnormalities of the sperm flagella; OMIM:NA (PS258150) | XL | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 4 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
AKR1C2 | 10p15.1 | Hypospadias | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
AKR1C3 | 10p15.1 | Hypospadias | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
AKR1C4 | 10p15.1 | Hypospadias | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
AKR1D1 | 7q33 | Hypospadias | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
ALKBH5 | 17p11.2 | Male infertility | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
ALOX15 | N/A | 17p13.2 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
ALX4 | KIAA1788; CRS5; FND2; FPP; PFM; | 11p11.2 | Cryptorchidism | AD | Syndromic infertility | Variable | 7.5 | Limited | Download | Houston et al. 2021 |
AMELY | Yp11.2 | Oligozoospermia | YL | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
AMH | MIF; MIS; | 19p13.3 | Persistent Müllerian Duct Syndrome; OMIM:261550 | AR | Reproductive system syndrome/endocrine disorder | Oligoasthenoteratozoospermia | 17 | Definitive | Download | Houston et al. 2021 |
AMHR2 | AMHR; MISR2; | 12q13.13 | Persistent Müllerian Duct Syndrome; OMIM:261550 | AR | Reproductive system syndrome/endocrine disorder | Oligoasthenoteratozoospermia | 17 | Definitive | Download | Houston et al. 2021 |
AMN1 | 12p11.21 | Hypogonadotropic hypogonadism and Kallmann syndrome | AR | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
ANOS1 | HH1; HHA; KAL; KMS; KAL1; ADMLX; WFDC19; KALIG-1 | Xp22.31 | Kallmann syndrome; OMIM:308700 | XL | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 16 | Definitive | Download | Houston et al. 2021 |
ANOS1 | KAL1 | Xp22.31 | Isolated Hypogonadotropic Hypogonadism (normosmic); OMIM:308700 | XL | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 13 | Strong | Download | Houston et al. 2021 |
APOA1 | HPALP2, apo(a) | 11q23.3 | Testicular amyloidosis; OMIM:105200 | AD | Syndromic infertility | Azoospermia, oligozoospermia | 12 | Moderate | Download | Houston et al. 2021 |
APOE | LDLCQ5, LPG, APOE4 | 19q13.32 | Male infertility; OMIM:NA (PS258150) | Undetermined | Syndromic infertility | Asthenoteratozoospermia, azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
AR | DHTR; NR3C4 | Xq12 | Partial androgen insentitivity syndrome; OMIM:312300/300633 | XL | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 17 | Definitive | Download | Houston et al. 2021 |
AR | DHTR; NR3C4 | Xq12 | Non-obstructive azoospermia; OMIM:NA | XL | Isolated infertility | Azoospermia, oligoasthenoteratozoospermia | 17 | Definitive | Download | Houston et al. 2021 |
ARID5B | DESRT; MRF2 | 10q21.2 | Non-obstructive azoospermia; OMIM:NA(PS258150) | AR | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
ARL2BP | BART, BART1, RP66 | 16q13 | Asthenozoospermia and Retinitis Pigmentosa; OMIM:615434 | AR | Syndromic infertility | Asthenozoospermia | 6 | Limited | Download | Houston et al. 2021 |
ARMC2 | N/A | 6q21 | Multiple morphological abnormalities of the sperm flagella; OMIM:618433 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 11 | Moderate | Download | Houston et al. 2021 |
ARMCX4 | GASP4, MGC40053, CXorf35 | Xq22.1 | Non obstructive azoospermia, OMIM: 301046 | XL | Isolated infertility | Azoospermia, oligozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
ART3 | 4q21.1 | Non-obstructive azoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
ARX | Xp21.3 | 5α-reductase deficiency | XL | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
ATF3 | 1q32.3 | Hypospadias | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
ATXN1 | N/A | 6p22.3 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AD | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
AURKC | ARK3; ARK-3; STK13; AIE2; AIK3; AurC; SPGF5; AIRK3; | 19q13.43 | Macrozoospermia; OMIM:243060 | AR | Isolated infertility | Teratozoospermia: Macrozoospermia | 17 | Definitive | Download | Houston et al. 2021 |
AXL | ARK; UFO; JTK11; Tyro7 | 19q13.2 | Kallmann syndrome; Anosmia in combination with Hypogonadotropic Hypogonadism. Additional features may include cryptorchidism, unilateral absence of vas deferens, and/or micropenis | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
B4GALT1 | 9p21.1 | Fertilization failure | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
B4GAT1 | 11q13.2 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
BCL2L2 | 14q11.2 | Non-obstructive azoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
BCORL1 | CXorf10, SHUVER, FLJ11362 | Xq26.1 | Non obstructive azoospermia; OMIM: 300688 | XL | Isolated infertility | Azoospermia | 4.75 | Limited | Download | Houston et al. 2021 |
BEX3 | Xq22.2 | Non-obstructive azoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
BMP4 | ZYME; BMP2B; OFC11; BMP2B1; MCOPS6 | 14q22.2 | Hypospadias; OMIM:NA (PS300633). Micropenis; OMIM:NA | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia | 10.25 | Moderate | Download | Houston et al. 2021 |
BMP7 | OP-1 | 20q13.31 | Hypospadias; OMIM:NA (PS300633) | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia | 10.25 | Moderate | Download | Houston et al. 2021 |
BMPR1B | 4q22.3 | Azoospermia | AD | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
BNC2 | BSN2; FLJ20043; LUTO; | 9p22.3-p22.2 | Hypospadias; OMIM:NA (PS300633) | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia | 10 | Moderate | Download | Houston et al. 2021 |
BOLL | 2q33.1 | Azoospermia and oligozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
BPY2 | Yq11.223 | Azoospermia and oligozoospermia | YL | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
BRAF | 7q34 | Cryptorchidism; OMIM:NA (PS258150) | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 4 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
BRCA1 | PPP1R53, BRCC1, FANCS, RNF53 | 17q21.31 | Male infertility; OMIM:NA (PS258150) | Undetermined | Isolated infertility | Azoospermia, oligozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
BRCA2 | FANCD1, FACD, FANCD | 13q13.1 | Idiopahic male infertility (including azoospermia, oligozoospermia, asthenozoospermia, and teratozoospermia) | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
BRD2 | BRD2-IT1, D6S113E, FSH, FSRG1, NAT, O27.1.1, RING3, RNF3 | 6p21.32 | Non-obstructive azoospermia; OMIM:NA (PS258150) | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
BRDT | BRD6, CT9, SPGF21 | 1p22.1 | Acephalic sperm; OMIM:617644 | AR | Isolated infertility | Teratozoospermia: Acephalic sperm | 4.75 | Limited | Download | Houston et al. 2021 |
BRDT | CT9, SPGF21, BRD6 | 1p22.1 | Non-obstructive azoospermia | AR | Isolated infertility | Azoospermia | 4.5 | Limited | Download | Houston et al. 2021 |
BRWD1 | 21q22.2 | Non-obstructive azoospermia | AR | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
BSCL2 | 11q12.3 | Lipodystrophy; OMIM:269700 | AR | Syndromic infertility | Teratozoospermia: abnormal heads, multiple tails, bundled sperm | 6 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
C2CD6 | ALS2CR11 | 2q33.1 | Globozoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Teratozoospermia: globozoospermia | 3 | Limited | Download | Houston et al. 2021 |
C7orf61 | NA | 7q22.1 | Globozoospermia (OMIM: 613958, 102530); Acrosomal hypoplasia | AR | Isolated infertility | Teratozoospermia: globozoospermia | 3 | Limited | Download | Houston et al. 2021 |
CACNA2D1 | 7q21.11 | Azoospermia | AD | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CALCA | 11p15.2 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CALCB | 11p15.2 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CALCRL | 2q32.1 | Cryptorchidism | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CAMK4 | 5q22.1 | Azoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CAPZA3 | 12p12.3 | Male infertility | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CASR | 3q13.33-q21.1 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CATIP | C2orf62 | 2q35 | Oligoasthenoteratozoospermia | AR | Isolated infertility | Oligoasthenoteratozoospermia | 7.25 | Limited | Download | Houston et al. 2021 |
CATSPER1 | 11q13.1 | Asthenozoospermia; OMIM:612997 | AR | Isolated infertility | Oligoasthenoteratozoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
CATSPER2 | N/A | 15q15.3 | Asthenozoospermia without deafness | AR | Isolated infertility | Asthenoteratozoospermia. normozoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
CATSPER2 | N/A | 15q15.3 | Deafness infertility syndrome; OMIM: 611102 | AR | Syndromic infertility | Asthenoteratozoospermia. normozoospermia | 11 | Moderate | Download | Houston et al. 2021 |
CATSPER2 | N/A | 15q15.3 | Normozoospermia and fertilitzation failure with CATSPER2 function disruption; OMIM:NA (PS258150) | AR | Syndromic infertility | Asthenoteratozoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
CATSPER2 | N/A | 15q15.3 | Oligozoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Asthenoteratozoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
CATSPER3 | 5q31.1 | Asthenozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CATSPER4 | 1p36.11 | Asthenozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CATSPERE | 1q44 | Fertilization failure; OMIM:NA (PS258150) | AR | Isolated infertility | Normozoospermia | 2 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
CBX2 | 17q25.3 | 46,XX Disorder of sex development | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CCDC103 | 17q21.31 | Primary ciliary dyskinesia; OMIM:614679 | AR | Syndromic infertility | Asthenoteratozoospermia: Multiple Morphological Abnormalities of the Sperm Flagella | 6 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
CCDC141 | CAMDI; FLJ39502 | 2q31.2 | Kallmann syndrome; OMIM:NA (PS147950) | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 12 | Moderate | Download | Houston et al. 2021 |
CCDC39 | N/A | 3q26.33 | Primary ciliary dyskinesia; OMIM:613807 | AR | Syndromic infertility | Oligoasthenoteratozoospermia | 13 | Strong | Download | Houston et al. 2021 |
CCDC39 | 3q26.33 | Asthenozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CCDC40 | CFAP172, CILD15, FAP172 | 17q25.3 | Primary ciliary dyskinesia; OMIM:613808 | AR | Syndromic infertility | Asthenoteratozoospermia | 13.25 | Strong | Download | Houston et al. 2021 |
CCDC40 | 17q25.3 | Asthenozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CCDC62 | CT109 | 12q24.31 | Globozoospermia | AR | Isolated infertility | Teratozoospermia: globozoospermia | 5 | Limited | Download | Houston et al. 2021 |
CCDC9 | N/A | 19q13.32 | Asthenozoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Asthenoteratozoospermia | 3 | Limited | Download | Houston et al. 2021 |
CCIN | Calicin | 9p13.3 | Globozoospermia | AR | Isolated infertility | Teratozoospermia: globozoospermia | 3 | Limited | Download | Houston et al. 2021 |
CCKAR | 4p15.2 | Hypogonadotropic hypogonadism | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CCKBR | 11p15.4 | Hypogonadotropic hypogonadism and Kallmann syndrome, undescended testes | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CCNA1 | 13q13.3 | Azoospermia and oligozoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CD46 | 1q32.2 | Idiopathic male infertility | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CDC14A | DFNB32, DFNB35, HCDC14 | 1p21.2 | Oligoasthenoteratozoospermia OMIM:608653 | AR | Syndromic infertility | Azoospermia, oligoasthenoteratozoospermia | 9 | Moderate | Download | Houston et al. 2021 |
CDC20 | 1p34.2 | Non-obstructive azoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CDK2 | 12q13.2 | Non-obstructive azoospermia | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CDKN2A | ARF, CDK4I, CDKN2, CMM2, INK4, INK4A, MLM, MTS-1, MTS1, P14, P14ARF, P16, P16-INK4A, P16INK4, P16INK4A, P19, P19ARF, TP16 | 9p21.3 | Male infertility; OMIM:NA (PS258150) | Undetermined | Isolated infertility | azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
CDY1 | Yq11.23 | Non-obstructive azoospermia | YL | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CEP112 | CCDC46 | 17q24.1 | Acephalic sperm; OMIM:NA (PS258150) | AR | Isolated infertility | Oligoasthenoteratozoospermia | 4.5 | Limited | Download | Houston et al. 2021 |
CEP135 | N/A | 4q12 | Multiple morphological abnormalities of the sperm flagella; OMIM:617576 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 6.5 | Limited | Download | Houston et al. 2021 |
CEP290 | 3H11AG, KIAA0373, NPHP6, BBS14 | 12q21.32 | Leber Congenital Amaurosis; OMIM:611755 | AR | Syndromic infertility | Asthenozoospermia | 9 | Moderate | Download | Houston et al. 2021 |
CEP78 | CRDHL, IP63, C9orf81 | 9q21.2 | Oligoasthenoteratospermia in combination with cone-rod dystrophy and hearing loss; OMIM: 617236 | AR | Syndromic infertility | Oligoasthenoteratospermia | 4 | Limited | Download | Houston et al. 2021 |
CFAP251 | WDR66 | 12q24.31 | Multiple morphological abnormalities of the sperm flagella; OMIM:NA (PS258150) | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 17 | Definitive | Download | Houston et al. 2021 |
CFAP300 | C11orf70 | 11q22.1 | Primary ciliary dyskinesia; OMIM:NA (PS244400) | AR | Syndromic infertility | Oligoasthenoteratozoospermia | 5 | Limited | N/A | Oud et al. 2019 Human Reproduction |
CFAP43 | WDR96, C10ORF79 | 10q25.1 | Multiple morphological abnormalities of the sperm flagella; OMIM:617592 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 17 | Definitive | Download | Houston et al. 2021 |
CFAP44 | N/A | 3q13.2 | Multiple morphological abnormalities of the sperm flagella; OMIM:617593 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 17 | Definitive | Download | Houston et al. 2021 |
CFAP65 | CCDC108, SPGF40 | 2q35 | Multiple morphological abnormalities of the sperm flagella; OMIM:618664 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 15 | Strong | Download | Houston et al. 2021 |
CFAP69 | N/A | 7q21.13 | Multiple morphological abnormalities of the sperm flagella; OMIM:617959 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 13 | Strong | Download | Houston et al. 2021 |
CFAP70 | TTC18, TPR Repeat Protein 18 | 10q22.2 | Multiple morphological abnormalities of the sperm flagella; OMIM:618670 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 6.75 | Limited | Download | Houston et al. 2021 |
CFAP74 | KIAA1751; C1orf222; FLJ45476; | 1p36.33 | Multiple morphological abnormalities of the sperm flagella; OMIM:NA (PS258150) | AR | Isolated Infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | ≤2 | No evidence | Download | Houston et al. 2021 |
CFAP91 | AAT1; MAATS1; C3orf15; CaM-IP2; SPATA26; AAT1alpha | 3q13.33 | Multiple morphological abnormalities of the sperm flagella; OMIM:609910 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 9 | Moderate | Download | Houston et al. 2021 |
CFTR | MRP7, ABCC7, ABC35, CF | 7q31.2 | Congenital Bilateral/Unilateral Absence of Vas Deferens; OMIM:277180 | AR | Isolated infertility | Azoospermia | 17 | Definitive | Download | Houston et al. 2021 |
CFTR | 7q31.2 | Non-obstructive azoospermia or oligozoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia, oligozoospermia | 7 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
CFTR | 7q31.2 | Low fertilization and pregnancy rate | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CHD5 | N/A | 1p36.31 | No OMIM. Male infertility | Undetermined | Isolated infertility | N/A | N/A | Unable to classify | Download | Houston et al. 2021 |
CHD7 | 8q12.2 | Kallmann syndrome without CHARGE phenotype; OMIM:612370 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 16 | Definitive | N/A | Oud et al. 2019 Human Reproduction | |
CHD7 | KIAA1416; FLJ20357; FLJ20361; KAL5; CRG; HH5; IS3; | 8q12.2 | Isolated Hypogonadotropic Hypogonadism (normosmic) without CHARGE phenotype; OMIM:612370 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 17 | Definitive | Download | Houston et al. 2021 |
CLCA4 | CaCC; CaCC2 | 1p22.3 | Azoospermia or oligoasthenozoospermia | Undetermined | Isolated infertility | Azoospermia, oligozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
CLDN2 | SP82 | Xq22.3 | Congenital bilateral absence of the vas deferens, Gene ID OMIM: 300520 | XL | Isolated infertility | Azoospermia | 3.75 | Limited | Download | Houston et al. 2021 |
CLOCK | BHLHe8, EC 2.3.1.48 | 4q12 | Oligozoospermia? OMIM: 601851 | Undetermined | Isolated infertility | Oligozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
CNTN2 | 1q32.1 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
COL1A1 | 17q21.33 | Sertoli cell only syndrome | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CRCP | 7q11.21 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CREM | 10p11.21 | Azoospermia | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CRISP2 | 6p12.3 | Asthenozoospermia and teratozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CS | 12q13.3 | Azoospermia and oligozoospermia | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CSMD1 | PPP1R24 | 8p23.2 | Non-obstructive azoospermia; OMIM:NA (PS258150) | Undetermined | Isolated infertility | Azoospermia, oligozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
CSNK2A2 | 16q21 | Globozoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CSNK2B | 6p21.33 | Globozoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CTCFL | 20q13.31 | Oligoasthenoteratozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CUL4B | Xq24 | Sertoli cell only syndrome | XL | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
CXCR4 | 2q22.1 | Hypogonadotropic hypogonadism and Kallmann syndrome | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
CYP11A1 | CHOLESTEROL SIDE-CHAIN CLEAVAGE ENZYME; CYTOCHROME P450 SIDE-CHAIN CLEAVAGE ENZYME; CYTOCHROME P450SCC; CYTOCHROME P450C11A1; CYP11A | 15q24.1 | Congenital adrenal insufficiency with partial 46,XY sex reversal (Prader stage 4; 5 or 6); OMIM:613743 | AR | Reproductive system syndrome/endocrine disorder | n/a | 16 | Definitive | Download | Houston et al. 2021 |
CYP11B1 | P450C11 | 8q24.3 | 46,XX Differences of Sex Development (Prader scale 4; 5 or 6) due to congenital adrenal hyperplasia (11-beta-hydroxylase deficiency); OMIM: 202010 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia | 17 | Definitive | Download | Houston et al. 2021 |
CYP17A1 | N/A | 10q24.32 | 46,XY Differences of Sex Development (Prader stage 4, 5 or 6) due to 17-alpha-hydroxylase/17,20-lyase deficiency; OMIM:202110 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 16 | Definitive | Download | Houston et al. 2021 |
CYP19A1 | Aromatase | 15q21.2 | Aromatase excess syndrome with gynaecomastia; OMIM:139300 | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 17 | Definitive | Download | Houston et al. 2021 |
CYP19A1 | Aromatase | 15q21.2 | 46,XX Differences of Sex Development (Prader scale 4; 5 or 6) due to aromatase deficiency; OMIM:613546 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia | 16 | Definitive | Download | Houston et al. 2021 |
CYP19A1 | Aromatase | 15q21.2 | Male infertility in 46,XY men due to aromatase deficiency; OMIM:613546 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 9.5 | Moderate | Download | Houston et al. 2021 |
CYP1A1 | CYPIA1, CYP1 | 15q24.1 | Non-Obstructive Azoospermia; OMIM: 108330 | AR | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
CYP1B1 | NA | 2p22.2 | Non-Obstructive Azoospermia | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
CYP21A2 | P450c21B; CYP21B; CA21H; CYP21; CAH1; CPS1; | 6p21.33 | Classic congenital adrenal hyperplasia; OMIM:201910 | AR | Reproductive system syndrome/endocrine disorder | Variable | 17 | Definitive | Download | Houston et al. 2021 |
CYP21A2 | 6p21.33 | Non-classic adrenal hyperplasia (late onset or no CAH symptoms); OMIM: 201910 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 17 | Definitive | N/A | Oud et al. 2019 Human Reproduction | |
CYP26B1 | RHFCA; CYP26A2; P450RAI2; P450RAI-2 | 2p13.2 | Non-obstructive azoospermia, GENE OMIM: 605207 | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
DAZ1 | Yq11.223 | Azoospermia | YL | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
DAZL | 3p24.3 | Azoospermia and oligozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
DCAF17 | 2q31.1 | Hypogonadotropic hypogonadism | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
DCC | NTN1R1; | 18q21.2 | Kallmann syndrome; OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 6 | Limited | Download | Houston et al. 2021 |
DDX25 | 11q24.2 | Azoospermia and oligozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
DDX3Y | Yq11.221 | Azoospermia | YL | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
DDX53 | Xp22.11 | Non-obstructive azoospermia | XL | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
DEFB126 | 20p13 | Male infertility | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
DHH | 12q13.12 | 46,XY Differences of Sex Development (Pradel scale 4; 5 or 6); OMIM:233420 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
DHH | 12q13.12 | 46,XY Disorder of sex development (prader 4, 5 or 6) | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
DHX37 | N/A | 12q24.31 | 46,XY Differences of Sex Development (Prader scale 4; 5 or 6); OMIM:273250 | AD | Reproductive system syndrome/endocrine disorder | No semen | 11 | Moderate | Download | Houston et al. 2021 |
DKK1 | 10q21.1 | Hypospadias | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
DLX5 | 7q21.3 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
DMC1 | LIM15, DMC1H | 22q13.1 | Non-obstructive azoospermia; OMIM:NA(PS258150) | AR | Isolated infertility | Azoospermia | 7.25 | Limited | Download | Houston et al. 2021 |
DMRT1 | DMT1 | 9p24.3 | Non-obstructive azoospermia; OMIM:NA(PS258150) | AD | Isolated infertility | Azoospermia | 10 | Moderate | Download | Houston et al. 2021 |
DMXL2 | N/A | 15q21.2 | Kallmann syndrome; OMIM:NA (PS147950 ) | AR | Reproductive system syndrome/endocrine disorder | Unclear | ≤2 | No evidence | Download | Houston et al. 2021 |
DMXL2 | N/A | 15q21.2 | Isolated Hypogonadotropic Hypogonadism (normosmic); OMIM:NA (PS147950 ) | AR | Reproductive system syndrome/endocrine disorder | Unclear | ≤2 | No evidence | Download | Houston et al. 2021 |
DNAAF2 | PF13, KTU | 14q21.3 | Primary ciliary dyskinesia; OMIM:612518 | AR | Syndromic infertility | Asthenoteratozoospermia | 12.25 | Moderate | Download | Houston et al. 2021 |
DNAAF4 | CILD25, DYX1, DYX1C1, DYXC1, EKN1, RD | 15q21.3 | Primary ciliary dyskinesia; OMIM:615482 | AR | Syndromic infertility | Asthenoteratozoospermia | 13 | Strong | Download | Houston et al. 2021 |
DNAAF5 | HEATR2 | 7p22.3 | Primary ciliary dyskinesia; OMIM:614874 | AR | Syndromic infertility | Asthenoteratozoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction |
DNAAF6 | CILD36; PIH1D3; CXorf41; NYSAR97; TWISTER | Xq22.3 | Primary ciliary dyskinesia: OMIM:300991 | XL | Syndromic infertility | Asthenoteratozoospermia: absent ODAs and reduced to absent IDAs | 15 | Strong | Download | Houston et al. 2021 |
DNAH1 | HL11; HDHC7; HL-11; CILD37; DNAHC1; HSRF-1; SPGF18; XLHSRF-1 | 3p21.1 | Multiple morphological abnormalities of the sperm flagella; OMIM:617576 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 17 | Definitive | Download | Houston et al. 2021 |
DNAH1 | HL11; HDHC7; HL-11; CILD37; DNAHC1; HSRF-1; SPGF18; XLHSRF-1 | 3p21.1 | Azoospermia | AR | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
DNAH1 | HL11; HDHC7; HL-11; CILD37; DNAHC1; HSRF-1; SPGF18; XLHSRF-1 | 3p21.1 | Asthenoteratozoospermia | AR | Isolated infertility | Asthenoteratozoospermia | 6.5 | Limited | Download | Houston et al. 2021 |
DNAH1 | HL11; HDHC7; HL-11; CILD37; DNAHC1; HSRF-1; SPGF18; XLHSRF-1 | 3p21.1 | Oligoasthenoteratozoospermia | AR | Isolated infertility | Oligoasthenoteratozoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
DNAH11 | DNAHC11, DNAHBL, DPL11, CILD7 | 7p15.3 | Asthenozoospermia | AR | Syndromic infertility | Asthenoteratozoospermia | 5.5 | Limited | Download | Houston et al. 2021 |
DNAH17 | N/A | 17q25.3 | Multiple morphological abnormalities of the sperm flagella; OMIM:618643 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 15 | Strong | Download | Houston et al. 2021 |
DNAH2 | DNAHC2; DNHD3; KIAA1503 | 17p13.1 | Multiple morphological abnormalities of the sperm flagella; OMIM:619094 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 4.5 | Limited | Download | Houston et al. 2021 |
DNAH5 | DNAHC5; HL1; CILD3; KTGNR; PCD; KIAA1603; | 5p15.2 | Asthenozoospermia | AR | Isolated infertility | Asthenozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
DNAH6 | NA | 2p11.2 | Azoospermia | AR | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
DNAH6 | na | 2p11.2 | Teratozoospermia; OMIM:NA (PS258150). Globozoospermia and acephaly | AR | Isolated infertility | Teratozoospermia: globozoospermia, acephalic sperm | 3.5 | Limited | Download | Houston et al. 2021 |
DNAH6 | NA | 2p11.2 | Multiple morphological abnormalities of the sperm flagella; OMIM:NA (PS258150) | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 4 | Limited | Download | Houston et al. 2021 |
DNAH9 | 17p12 | Primary ciliary dyskinesia: OMIM:NA (PS244400) | AR | Syndromic infertility | Asthenoteratozoospermia | 3 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
DNAI1 | 9p13.3 | Primary ciliary dyskinesia; OMIM:244400 | AR | Syndromic infertility | Asthenoteratozoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
DNAI1 | 9p13.3 | Asthenozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
DNAI2 | 17q25.1 | Primary ciliary dyskinesia; OMIM:612444 | AR | Syndromic infertility | Asthenoteratozoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
DNAJB13 | CILD34; TSARG5; TSARG6; RSPH16A | 11q13.4 | Primary ciliary dyskinesia; OMIM:617091 | AR | Syndromic infertility | Oligoasthenoteratozoospermia | 8 | Limited | Download | Houston et al. 2021 |
DNAJB13 | CILD34; TSARG5; TSARG6; RSPH16A | 11q13.4 | Asthenozoospermia | AR | Isolated infertility | Asthenoteratozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
DNMT1 | 19p13.2 | Non-obstructive azoospermia; OMIM:NA(PS258150) | AD | Isolated infertility | Azoospermia | 3 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
DNMT3A | 2p23.3 | Oligozoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
DNMT3B | ICF, ICF1 | 20q11.21 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AD | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
DNMT3L | 21q22.3 | Azoospermia and oligozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
DPP6 | 7q36.2 | Azoospermia | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
DPY19L2 | 12q14.2 | Globozoospermia; OMIM:613958 | AR | Isolated infertility | Teratozoospermia: globozoospermia | 16 | Definitive | Download | Houston et al. 2021 | |
DRC1 | CCDC164, CILD21, C2orf39 | 2p23.3 | Primary ciliary dyskinesia; OMIM: 615288 | AR | Syndromic infertility | Asthenoteratozoospermia | 5.5 | Limited | Download | Houston et al. 2021 |
DUSP6 | N/A | 12q21.33 | Kallmann syndrome; Hypogonadotropic hypogonadism | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 7 | Limited | Download | Houston et al. 2021 |
DYNLT3 | Xp11.4 | Azoospermia | XL | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
DZIP1 | N/A | 13q32.1 | Multiple morphological abnormalities of the sperm flagella; OMIM:NA (PS258150) | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 6.5 | Limited | Download | Houston et al. 2021 |
E2F1 | 20q11.22 | Non-obstructive azoospermia; OMIM:NA(PS258150) | AD | Isolated infertility | Azoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
EBF2 | 8p21.2 | Kallmann syndrome; hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
EDNRB | 13q22.3 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
EFNA5 | 5q21.3 | Hypogonadotropic hypogonadism | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
EGF | 4q25 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
EGFR | 7p11.2 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
EGR4 | 2p13.2 | Oligozoospermia and azoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
EIF1AY | EIF-4C; | Yq11.223 | Non-Obstructive Azoospermia | YL | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
EIF4G1 | P220; EIF4F; EIF4G; EIF4GI; PARK18; EIF-4G1 | 3q27.1 | Asthenozoospermia; OMIM:NA (PS258150) | AD | Isolated infertility | Asthenozoospermia | 3 | Limited | Download | Houston et al. 2021 |
EIF5A2 | 3q26.2 | Oligozoospermia and azoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
EMX2 | 10q26.11 | Kallmann syndrome; hypogonadotropic hypogonadism | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
EPHA5 | 4q13.1-q13.2 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
EPHX2 | ABHD20; CEH; SEH; | 8p21.2-p21.1 | Non-obstructive Azoospermia | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
EPPIN | 20q13.12 | Male infertility | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
ERBB4 | 2q34 | Isolated Hypogonadotropic Hypogonadism; OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 3 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
ESR1 | ER, ESR, ESRA, ESTRR, Era, NR3A1 | 6q25.1-q25.2 | 46 XY Differences of Sex development OMIM gene 133430 | AD | Reproductive system syndrome/endocrine disorder | Unclear | 3.5 | Limited | Download | Houston et al. 2021 |
ESR2 | 14q23.2-q23.3 | Oligozoospermia and azoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
ETV5 | 3q27.2 | Non-obstructive azoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
EXT1 | 8q24.11 | Oligozoospermia | AD | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
FABP9 | 8q21.13 | Teratozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
FAM47C | N/A | Xp21.1 | Varicocele leading to oligozoospermia; OMIM:NA (PS258150) | XL | Isolated infertility | Oligozoospermia | 3 | Limited | Download | Houston et al. 2021 |
FANCA | FAA, FANCH, FACA, FA-H, FAH, FA1, FA | 16q24.3 | Occult Fanconi Anemia; OMIM:NA (PS227650) | AR | Syndromic infertility | Azoospermia | 10 | Moderate | Download | Houston et al. 2021 |
FANCM | 14q21.2 | Oligozoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia, oligozoospermia | 13 | Strong | Download | Houston et al. 2021 | |
FATE1 | FATE | Xq28 | Oligoasthenozoospermia; OMIM:NA (PS258150) | XL | Isolated infertility | Oligoasthenozoospermia | 2 | No evidence | N/A | Oud et al. 2019 Human Reproduction |
FBXO43 | EMI2, Fbx43 | 8q22.2 | Oligoasthenoteratozoospermia | AR | Isolated infertility | Oligoasthenoteratozoospermia | 5 | Limited | Download | Houston et al. 2021 |
FEZ1 | 11q24.2 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
FEZF1 | ZNF312B, FEZ | 7q31.32 | Kallmann syndrome; OMIM:616030 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia | 8 | Limited | Download | Houston et al. 2021 |
FGF10 | 5p12 | Hypospadias | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
FGF17 | N/A | 8p21.3 | Kallmann syndrome; OMIM:615270 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 9 | Moderate | Download | Houston et al. 2021 |
FGF17 | N/A | 8p21.3 | Isolated Hypogonadotropic Hypogonadism (normosmic); OMIM:615270 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 8 | Limited | Download | Houston et al. 2021 |
FGF18 | 5q35.1 | Kallmann syndrome | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
FGF8 | AIGF | 10q24.32 | Kallmann syndrome; OMIM: 612702 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 10 | Moderate | Download | Houston et al. 2021 |
FGF8 | AIGF | 10q24.32 | Isolated Hypogonadotropic Hypogonadism (normosmic); OMIM:612702 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 14 | Strong | Download | Houston et al. 2021 |
FGF8 | 10q24.32 | Hypospadias | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
FGF9 | 13q12.11 | 46,XX Differences of Sex Development | AD | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
FGFR1 | N/A | 8p11.23 | Kallmann syndrome; OMIM:147950 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | 17 | Definitive | Download | Houston et al. 2021 |
FGFR1 | KAL2 | 8p11.23 | Isolated Hypogonadotropic Hypogonadism (normosmic); OMIM:147950 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 17 | Definitive | N/A | Oud et al. 2019 Human Reproduction |
FGFR1 | 8p11.23 | Late-onset Hypogonadotropic Hypogonadism | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
FGFR1 | 8p11.23 | Isolated cryptorchidism | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
FGFR2 | 10q26.13 | Isolated hypospadias | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
FHL5 | 6q16.1 | Azoospermia and oligozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
FKBP4 | 12p13.33 | Hypospadias | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
FKBP6 | FKBP36; | 7q11.23 | Non-obstructive Azoospermia | AR | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
FKBPL | 6p21.32 | Azoospermia | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
FLNA | FLN1 | Xq28 | Periventricular nodular heterotopia; OMIM: 300049 | XL | Syndromic infertility | Normozoospermia, oligozoospermia, azoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction |
FLRT3 | HH21 | 20p12.1 | Kallmann syndrome | Undetermined | Reproductive system syndrome/endocrine disorder | Unclear | N/A | Unable to classify | Download | Houston et al. 2021 |
FLRT3 | HH21 | 20p12.1 | Hypogonaditropic hypogonadism; OMIM:615271 | Undetermined | Reproductive system syndrome/endocrine disorder | Unclear | N/A | Unable to classify | Download | Houston et al. 2021 |
FOXL2 | 3q22.3 | Oligozoospermia in combination with Blepharophimosis, corneal vascularization, deafness, and acroosteolysis | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
FOXP3 | SCURFIN, JM2 | Xp11.23 | Non obstructive azoospermia; Endocrinopathy; OMIM: 300292 | XL | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
FSHB | FSHbeta | 11p14.1 | Isolated Hypogonadotropic Hypogonadism; OMIM:229070 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia | 12.25 | Moderate | Download | Houston et al. 2021 |
FSHR | LGR1, FSHRO | 2p16.3 | Hypergonadotropic hypogonadism; OMIM:NA (PS147950) | AR | Reproductive system syndrome/endocrine disorder | Azoospermia | 11 | Moderate | Download | Houston et al. 2021 |
FSIP2 | SPGF34 | 2q32.1 | Multiple morphological abnormalities of the sperm flagella; OMIM:618153 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 12 | Moderate | Download | Houston et al. 2021 |
FTHL17 | Xp21.2 | Azoospermia | XL | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
FTO | 16q12.2 | Oligozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
FUS | 16p11.2 | Non-obstructive azoospermia | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
GALNTL5 | N/A | 7q36.1 | Asthenozoospermia; OMIM:NA (PS258150) | AD | Isolated infertility | Asthenozoospermia | 7.5 | Limited | Download | Houston et al. 2021 |
GAP43 | 3q13.31 | Kallmann syndrome | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
GAPDHS | 19q13.12 | Multiple morphological abnormalities of the sperm flagella; OMIM:NA (PS258150) | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
GAS8 | 16q24.3 | Primary ciliary dyskinesia; OMIM:616726 | AR | Syndromic infertility | Asthenoteratozoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
GATA4 | TACHD, ASD2, VSD1, TOF | 8p23.1 | 46,XY Differences of Sex Development (Prader scale 4; 5 or 6) resulting in anomalies of testicular development; OMIM:615542 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | 13 | Strong | Download | Houston et al. 2021 |
GFPT2 | GFAT, GFAT2 | 5q35.3 | No OMIM/Asthenozoospermia | AR | Isolated infertility | Asthenozoospermia | 3 | Limited | Download | Houston et al. 2021 |
GGCX | NA | 2p11.2 | No OMIM/Asthenozoospermia | AR | Isolated infertility | Asthenozoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
GGN | 19q13.2 | Oligozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
GGN | - | 19q13.2 | Globozoospermia | AR | Isolated infertility | Teratozoospermia: globozoospermia | 3.5 | Limited | Download | Houston et al. 2021 |
GH1 | 17q23.3 | Growth hormone deficiency; OMIM:262400/612781/173100 | AD | Reproductive system syndrome/endocrine disorder | Oligozoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
GHR | 5p13.1-p12 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
GJA1 | 6q22.31 | Oligozoospermia in combination with Blepharophimosis, corneal vascularization, deafness, and acroosteolysis | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
GJB2 | 13q12.11 | Oligozoospermia in combination with Blepharophimosis, corneal vascularization, deafness, and acroosteolysis | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
GJB6 | 13q12.11 | Oligozoospermia in combination with Blepharophimosis, corneal vascularization, deafness, and acroosteolysis | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
GLI3 | PHS; ACLS; GCPS; PAPA; PAPB; PAP-A; PAPA1; PPDIV; GLI3FL; GLI3-190 | 7p14.1 | Hypospadias without infertility, OMIM gene 165240 | AD | Reproductive system syndrome/endocrine disorder | Variable | 5.75 | Limited | Download | Houston et al. 2021 |
GLI3 | 7p14.1 | Kallmann syndrome | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
GNRH1 | LHRH; GRH; GNRH; LNRH; | 8p21.2 | Isolated Hypogonadotropic Hypogonadism; OMIM:614841 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia | 13.5 | Strong | Download | Houston et al. 2021 |
GNRH2 | GnRH-II; LH-RHII | 20p13 | Kallmann syndrome; OMIM:NA (PS147950) | Undetermined | Reproductive system syndrome/endocrine disorder | Unclear | N/A | Unable to classify | Download | Houston et al. 2021 |
GNRH2 | GnRH-II; LH-RHII | 20p13 | Normosmic Hypogonadotropic Hypogonadism; OMIM:NA (PS147950) | Undetermined | Reproductive system syndrome/endocrine disorder | Unclear | N/A | Unable to classify | Download | Houston et al. 2021 |
GNRHR | GNRHR1, LHRHR, LRHR, HH7, GRHR | 4q13.2 | Isolated Hypogonadotropic Hypogonadism; OMIM:146110 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia | 17 | Definitive | Download | Houston et al. 2021 |
GOPC | 6q22.1 | Globozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
GPX4 | 19p13.3 | Oligoasthenozoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
GTF2H3 | 12q24.31 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia | 2 | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
H1-7 | H1-7, HANP1, H1T2, H1f7 | 12q13.11 | Azoospermia and oligozoospermia | AR | Isolated infertility | Azoospermia, oligozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
H19 | 11p15.5 | Sertoli cell only syndrome | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
H2AX | H2AFX | 11q23.3 | Spermatogenic failure | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction |
H2BW1 | H2BFWT | Xq22.2 | Non-Obstructive Azoospermia | XL | Isolated infertility | Azoospermia | 4 | Limited | Download | Houston et al. 2021 |
HASPIN | 17p13.2 | Male infertility | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HAUS7 | UIP1 | Xq28 | Severe oligozoospermia; OMIM:NA (PS258150) | XL | Isolated infertility | Azoospermia, oligozoospermia | 3.5 | Limited | Download | Houston et al. 2021 |
HESX1 | N/A | 3p14.3 | Kallmann syndrome; OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Unclear | 7.5 | Limited | Download | Houston et al. 2021 |
HFE | 6p22.2 | Hypogonadism due to iron excess | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
HGF | 7q21.11 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HLA-DPB1 | DPB1; HLA-DP; HLA-DPB; HLA-DP1B | 6p21.32 | Non-obstructive azoospermia; OMIM 142858 | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
HLA-DQB1 | IDDM1; CELIAC1; HLA-DQB | 6p21.32 | Non obstructive azoospermia, OMIM gene 64305 | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
HLA-DRB1 | DRB1, SS1 | 6p21.32 | Non-obstructive azoospermia | ? | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
HMGB2 | 4q34.1 | Testicular failure | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOOK1 | 1p32.1 | Acephalic sperm | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
HORMAD1 | 1q21.3 | Non-obstructive azoospermia due to Meiotic arrest | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
HOXA10 | 7p15.2 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXA11 | 7p15.2 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXA13 | 7p15.2 | Cryptorchidism | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
HOXA4 | 7p15.2 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXA9 | 7p15.2 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXB13 | 17q21.32 | Cryptorchidism | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
HOXB6 | 17q21.32 | Hypospadias | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXB9 | 17q21.32 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXC10 | 12q13.13 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXC11 | 12q13.13 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXC12 | 12q13.13 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXC13 | 12q13.13 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXC9 | 12q13.13 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXD10 | 2q31.1 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXD11 | 2q31.1 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXD12 | 2q31.1 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HOXD13 | N/A | 2q31.1 | Cryptorchidism | AD | Reproductive system syndrome/endocrine disorder | Unclear | 4.5 | Limited | Download | Houston et al. 2021 |
HOXD9 | 2q31.1 | Cryptorchidism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HRAS | 11p15.5 | Cryptorchidism | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
HS6ST1 | N/A | 2q14.3 | Kallmann syndrome; OMIM:614880 | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 9.5 | Moderate | Download | Houston et al. 2021 |
HS6ST1 | 2q14.3 | Normosmic hypogonadotropic hypogonadism; OMIM:614880 | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 7 | Limited | Download | Houston et al. 2021 | |
HSD17B3 | N/A | 9q22.32 | 46,XY Differences of Sex Development (Prader scale 4; 5 or 6) resulting in anomalies of testicular development; OMIM:264300 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 16 | Definitive | Download | Houston et al. 2021 |
HSD17B4 | NA | 5q23.1 | Non-Obstructive Azoospermia | AR | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
HSD3B2 | SDR11E2, HSDB, HSD3B | 1p12 | Adrenal hyperplasia due to 3β-hydroxysteroid dehydrogenase deficiency; OMIM:201810 | AR | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 16.5 | Definitive | Download | Houston et al. 2021 |
HSF2 | HSTF2 | 6q22.31 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AD | Isolated infertility | Azoospermia | 8 | Limited | Download | Houston et al. 2021 |
HSFY1 | Yq11.222 | Azoospermia | YL | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HSP90AA1 | 14q32.31 | Varicocele | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
HYDIN | 16q22.2 | Primary ciliary dyskinesia; OMIM:608647; asthenozoospermia OMIM:NA (PS258150) | AR | Syndromic infertility | Asthenoteratozoospermia | 6 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
IFT140 | KIAA0590; WDTC2; C305C8.4; C380F5.1; MZSDS; SRTD9; RP80; | 16p13.3 | Oligoasthenoteratozoospermia | AR | Isolated infertility | Oligoasthenoteratozoospermia | 4 | Limited | Download | Houston et al. 2021 |
IGF1 | 12q23.2 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
IGF2R | MPRI; MPR300; CD222; CIMPR; MPR1; M6PR; | 6q25.3 | Non-obstructive Azoospermia | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
IGFALS | ALS; ACLSD | 16p13.3 | Kallman syndrome, OMIM gene 601489 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
IGSF10 | CMF608 | 3q25.1 | Delayed puberty; OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | 9.25 | Moderate | Download | Houston et al. 2021 |
IL17RD | SEF | 3p14.3 | Kallmann syndrome with hearing loss; OMIM:615267 | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 14.5 | Strong | Download | Houston et al. 2021 |
IL17RD | SEF | 3p14.3 | Normosmic hypogonadotropic hypogonadism; OMIM:615267 | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
ING2 | ING1L | 4q35.1 | Non-obstructive azoospermia | AR | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
INSL3 | NA | 19p13.11 | Cryptorchidism; OMIM:219050 | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 12 | Moderate | Download | Houston et al. 2021 |
INSL6 | 9p24.1 | Asthenozoospermia/cryptorchidism | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
IZUMO1 | 19q13.33 | Fertilization failure | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
JAG1 | 20p12.2 | Isolated Hypogonadotropic Hypogonadism; OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 2 | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
KASH5 | CCDC155 | 19q13.33 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia | 4 | Limited | N/A | Oud et al. 2019 Human Reproduction |
KATNAL1 | 13q12.3 | Non-obstructive azoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
KATNB1 | 16q21 | Oligoasthenozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
KCNQ1 | 11p15.5-p15.4 | Sertoli cell only syndrome | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
KDM3A | 2p11.2 | Oligozoospermia; OMIM:NA (PS258150) | AD | Isolated infertility | Oligozoospermia | 5 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
KIF2C | KNSL6; MCAK; CT139; | 1p34.1 | Non-obstructive Azoospermia | AR | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
KISS1 | 1q32.1 | Central Precocious Puberty | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
KISS1 | 1q32.1 | Kallmann syndrome; with or without anosmia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
KISS1R | AXOR12, CPPB1, GPR54, HH8, HOT7T175, KISS-1R | 19p13.3 | Kallmann syndrome; OMIM:614837 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 9 | Moderate | Download | Houston et al. 2021 |
KISS1R | AXOR12, CPPB1, GPR54, HH8, HOT7T175, KISS-1R | 19p13.3 | Isolated Hypogonadotropic Hypogonadism (normosmic); OMIM:614837 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 17 | Definitive | Download | Houston et al. 2021 |
KISS1R | AXOR12, CPPB1, GPR54, HH8, HOT7T175, KISS-1R | 19p13.3 | Azoospermia | AR | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
KIT | 4q12 | Azoospermia | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
KLB | 4p14 | Hypogonadotropic hypogonadism | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
KLF6 | 10p15.2 | Hypospadias | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
KLHL10 | SPGF11; FLJ32662 | 17q21.2 | Oligozoospermia; OMIM:615081 | AD | Isolated infertility | Oligozoospermia | 10.5 | Moderate | Download | Houston et al. 2021 |
KLK12 | 19q13.41 | Male infertility | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
KLK14 | 19q13.41 | Male infertility | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
KLK15 | 19q13.33 | Male infertility | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
KLK3 | 19q13.33 | Male infertility | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
KLK4 | 19q13.41 | Male infertility | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
KLK6 | 19q13.41 | Male infertility | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
KLK7 | 19q13.41 | Male infertility | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
KLK8 | 19q13.41 | Male infertility | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
KRAS | 12p12.1 | Cryptorchidism | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
LEP | 7q32.1 | Hypogonadotropic hypogonadism | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
LEPR | 1p31.3 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
LHB | CGB4; HH23; LSH-B; LSH-beta | 19q13.33 | Isolated Hypogonadotropic hypogonadism; OMIM:228300 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia | 16.5 | Definitive | Download | Houston et al. 2021 |
LHCGR | HHG; LHR; LCGR; LGR2; ULG5; LHRHR; LSH-R; LH/CGR; LH/CG-R | 2p16.3 | Leydig cell dysfunction with hypogonadism; OMIM:238320 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 16.5 | Definitive | Download | Houston et al. 2021 |
LHCGR | HHG; LHR; LCGR; LGR2; ULG5; LHRHR; LSH-R; LH/CGR; LH/CG-R | 2p16.3 | Male precocious puberty; OMIM:176410 | AD | Reproductive system syndrome/endocrine disorder | Oligozoospermia, normozoospermia | 17 | Definitive | Download | Houston et al. 2021 |
LHX3 | N/A | 9q34.3 | Kallmann syndrome; OMIM:221750 | AR | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 8 | Limited | Download | Houston et al. 2021 |
LHX4 | CPHD4 | 1q25.2 | Hypogonadotropic hypogonadism | Undetermined | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
LHX4 | CPHD4 | 1q25.2 | Combined pituitary hormone deficiency | Undetermined | Reproductive system syndrome/endocrine disorder | N/A | N/A | Unable to classify | Download | Houston et al. 2021 |
LHX4 | CPHD4 | 1q25.2 | Non-Obstructive Azoospermia | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
LHX9 | 1q31.3 | 46,XY Differences of Sex Development | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
LIF | 22q12.2 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
LIMK2 | 22q12.2 | Testicular failure | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
LIPE | 19q13.2 | Testicular failure | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
LRRC6 | TSLRP, LRTP | 8q24.22 | Primary ciliary dyskinesia; OMIM:614935 | AR | Syndromic infertility | Asthenoteratozoospermia | 13.5 | Strong | Download | Houston et al. 2021 |
LRWD1 | 7q22.1 | Sertoli cell only syndrome | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
LSM6 | 4q31.22 | Azoospermia | AD | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
M1AP | C2orf65, D6Mm5e, SPATA37 | 2p13.1 | Non-obstructive azoospermia; OMIM:619108 | AR | Isolated infertility | Azoospermia, severe oligozoospermia | 13 | Strong | Download | Houston et al. 2021 |
MAEL | SPATA35; CT128; | 1q24.1 | Non-obstructive Azoospermia | AR | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
MAGEB4 | Xp21.2 | Non-obstructive azoospermia; OMIM:NA (PS258150) | XL | Isolated infertility | Azoospermia | 3 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
MAMLD1 | CG1; F18; HYSP2; CXorf6 | Xq28 | 46,XY Differences of Sex Development (Prader scale 4; 5 or 6); OMIM:300758 | XL | Reproductive system syndrome/endocrine disorder | Unclear | 15 | Strong | Download | Houston et al. 2021 |
MAP2K1 | 15q22.31 | Cryptorchidism | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
MAP2K2 | 19p13.3 | Cryptorchidism; OMIM:NA (PS258150) | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 6 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
MAP3K1 | 5q11.2 | 46,XY Differences of Sex Development (Prader scale 4; 5 or 6); OMIM:613762 | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
MAP7D3 | MDP3, Mtap7d3, FLJ12649 | Xq26.3 | Non-obstructive azoospermia | XL | Isolated infertility | Azoospermia | 4.5 | Limited | Download | Houston et al. 2021 |
MASTL | 10p12.1 | Hypogonadotropic Hypogonadism | AR | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MC4R | 18q21.32 | Obesity with hypogonadotropic hypogonadism; OMIM:601665 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 5 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
MCM8 | 20p12.3 | Azoospermia | AR | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MCM9 | MCMDC1, C6orf61, DJ329L24.3, ODG4, HMCM9 | 6q22.31 | Non obstructive azoospermia, OMIM: 610098 | AR | Isolated infertility | Azoospermia | 5 | Limited | Download | Houston et al. 2021 |
MEI1 | NA | 22q13.2 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia | 13 | Strong | Download | Houston et al. 2021 |
MEIG1 | 10p13 | Azoospermia and oligozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
MEIOB | SPGF22, C16orf73, | 16p13.3 | Non-obstructive azoospermia; OMIM:617706 | AR | Isolated infertility | Azoospermia | 7.5 | Limited | Download | Houston et al. 2021 |
MET | 7q31 | Hypogonadotropic Hypogonadism | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
MGP | MGLAP; GIG36; NTI; | 12p12.3 | Asthenozoospermia; OMIM: 137167 | AR | Isolated infertility | Asthenozoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
MIER3 | 5q11.2 | 46,XY Differences of Sex Development | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MLH3 | HNPCC7 | 14q24.3 | Non-obstructive azoospermia due to Meiotic arrest | AR | Isolated infertility | Azoospermia | 7 | Limited | Download | Houston et al. 2021 |
MNS1 | N/A | 15q21.3 | Asthenoteratozoospermia; OMIM:NA (PS258150) | AR | Syndromic infertility | Asthenozoospermia | 9.5 | Moderate | Download | Houston et al. 2021 |
MORC1 | CT33, ZCW6, MORC | 3q13.13 | Non-obstructive azoospermia; OMIM: 603205 | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
MSH4 | 1p31.1 | Maturation arrest | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
MT-ATP6 | mitochondria | Varicocele/Oligoasthenoteratozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-ATP8 | mitochondria | Varicocele/Oligoasthenoteratozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-CO1 | mitochondria | Asthenozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-CO2 | mitochondria | Asthenozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-CO3 | mitochondria | Varicocele/Oligoasthenoteratozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-CYB | mitochondria | Asthenozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MTHFR | NA | 1p36.22 | Non-obstructive azoospermia; OMIM:617706 | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
MT-ND1 | mitochondria | Male infertility | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-ND2 | mitochondria | Oligoasthenoteratozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-ND3 | mitochondria | Varicocele/Oligoasthenoteratozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-ND4 | mitochondria | Asthenozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-ND4L | mitochondria | Varicocele | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-ND5 | mitochondria | Oligoasthenoteratozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MTOR | 1p36.22 | Isolated Hypogonadotropic hypogonadism; OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 3 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
MT-RNR1 | mitochondria | Asthenozoospermia and teratozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-RNR2 | mitochondria | Asthenozoospermia and teratozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MTRR | MSR; CblE; | 5p15.31 | Non-obstructive Azoospermia | AR | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
MT-TG | mitochondria | Varicocele | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-TH | mitochondria | Asthenozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-TK | mitochondria | Oligoasthenoteratozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-TL1 | mitochondria | Asthenozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-TR | mitochondria | Varicocele | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MT-TS1 | mitochondria | Oligoasthenoteratozoospermia | NA | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
MYRF | 11orf9, C11orf9, CUGS, MMERV, MRF, Ndt80, pqn-47 | 11q12.2 | 46XY Development of Sexual Differences, OMIM gene 608329 | AD | Reproductive system syndrome/endocrine disorder | Unclear | 14.5 | Strong | Download | Houston et al. 2021 |
NANOS1 | NANOS, NOS | 10q26.11 | Non-obstructive azoospermia; OMIM: 608226; Spermatogenic failure 12 (615413) | AD | Isolated infertility | Azoospermia | 3.5 | Limited | Download | Houston et al. 2021 |
NANOS2 | 19q13.32 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia | 5 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
NANOS3 | 19p13.12 | Azoospermia and oligozoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
NDNF | C4orf31, NORD, z-ndnf | 4q27 | Kallmann syndrome | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | 8 | Limited | Download | Houston et al. 2021 |
NECTIN2 | 19q13.32 | Teratozoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
NECTIN3 | 3q13.13 | Teratozoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
NLRP14 | NALP14; NOD5; GC-LRR; PAN8 | 11p15.4 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
NLRP3 | NA | 1q44 | Muckle-Wells Syndrome; OMIM:191900 | AD | Syndromic infertility | Azoospermia, oligozoospermia | 9 | Moderate | Download | Houston et al. 2021 |
NNT | 5p12 | Primary Adrenal Insufficiency with precocious puberty; OMIM:614736 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
NOS1 | 12q24.22 | Isolated Hypogonadotropic hypogonadism; OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 4 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
NOTCH1 | 9q34.3 | Isolated Hypogonadotropic hypogonadism; OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 3 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
NOTCH2 | 1p12 | Persistent mullerian duct syndrome | AD | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
NPAS2 | 2q11.2 | Non-obstructive azoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
NPFFR1 | 10q22.1 | Gonadotrophin-releasing hormone-dependent pubertal disorders | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
NPVF | 7p15.3 | Gonadotrophin-releasing hormone-dependent pubertal disorders | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
NPY1R | 4q32.2 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
NR0B1 | DAX1 | Xp21.2 | Congenital Adrenal Hypoplasia; OMIM:300200 | XL | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 17 | Definitive | Download | Houston et al. 2021 |
NR0B1 | DAX1 | Xp21.2 | Late-onset adrenal failure or isolated hypogonadotropic hypogonadism; OMIM:NA (PS147950) | XL | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 17 | Definitive | N/A | Oud et al. 2019 Human Reproduction |
NR0B1 | AHC; AHX; DSS; GTD; HHG; AHCH; DAX1; DAX-1; NROB1; SRXY2 | Xp21.2 | 46,XX Differences of Sex Development (Prader scale 4; 5 or 6); OMIM:NA | XL | Reproductive system syndrome/endocrine disorder | Azoospermia | 5.5 | Limited | Download | Houston et al. 2021 |
NR0B1 | AHC; AHX; DSS; GTD; HHG; AHCH; DAX1; DAX-1; NROB1; SRXY2 | Xp21.2 | Non-obstructive azoospermia, OMIM gene 300473 | XL | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
NR5A1 | FTZF1, FTZ1, SF1, AD4BP, STF-1, HSF-1 | 9q33.3 | 46,XY Differences of Sex Development (Prader scale 4; 5 or 6); OMIM:612965 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | 17 | Definitive | Download | Houston et al. 2021 |
NR5A1 | FTZF1, FTZ1, SF1, AD4BP, STF-1, HSF-1 | 9q33.3 | 46,XX Differences of Sex Development (Prader scale 4; 5 or 6); OMIM:617480 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | 16 | Definitive | Download | Houston et al. 2021 |
NR5A1 | FTZF1, FTZ1, SF1, AD4BP, STF-1, HSF-1 | 9q33.3 | Isolated spermatogenic failure; OMIM:184757 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 14 | Strong | N/A | Oud et al. 2019 Human Reproduction |
NRAS | 1p13.2 | Cryptorchidism; OMIM:NA (PS258150) | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 5 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
NRP1 | 10p11.22 | Hypogonadotropic hypogonadism | AD | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
NRP2 | 2q33.3 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
NSMF | NELF | 9q34.3 | Kallmann syndrome; OMIM:614838 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction |
NSMF | NELF; HH9; | 9q34.3 | Isolated hypogonadotropic hypogonadism (normosmic); OMIM:614838 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | 6.5 | Limited | Download | Houston et al. 2021 |
NSUN7 | 4p14 | Asthenozoospermia | AR | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
NTN1 | 17p13.1 | Kallmann syndrome; with or without anosmia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
NXF2 | Xq22.1 | Non-obstructive azoospermia | XL | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
OAZ3 | 1q21.3 | Azoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
ODF1 | N/A | 8q22.3 | Non-obstructive azoospermia; OMIM:NA (PS258150) | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
OFD1 | CXORF5 | Xp22.2 | Primary cilia dyskinesia; OMIM: 300170 | XL | Syndromic infertility | Unclear | N/A | Contradictory | Download | Houston et al. 2021 |
OR1D2 | OLFR1, HGMP07E, OR17-4 | 17p13.3 | OMIM: 164342; non-obstructive azoospermia | AR | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
OTUD4 | KIAA1046; HSHIN1; DUBA6; HIN1 | 4q31.21 | Kallmann syndrome | Undetermined | Reproductive system syndrome/endocrine disorder | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
OTX2 | 14q22.3 | Hypogonadotropic hypogonadism | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
OXCT2 | 1p34.2 | Male infertility | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
PACRG | 6q26 | Male infertility | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
PANK2 | 20p13 | Congenital bilateral absence of vas deferens; OMIM:NA (PS277180) | AR | Isolated infertility | Azoospermia | 4 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
PAPOLB | PAPT, TPAP | 7p22.1 | Non-obstructive azoospermia; OMIM:NA (PS258150) | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
PAX6 | 11p13 | Hypogonadotropic hypogonadism | AD | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
PCDH10 | 4q28.3 | Azoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
PCSK1 | 5q15 | Kallmann syndrome | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
PDE3A | 12p12.2 | Kallmann syndrome | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
PDHA2 | 4q22.3 | Complex digit malformation in combination; OMIM:NA | AR | Syndromic infertility | Azoospermia, oligozoospermia | 3 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
PGAM4 | Xq21.1 | Non-obstructive azoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
PICK1 | 22q13.1 | Globozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
PIN1 | 19p13 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
PIWIL1 | HIWI | 12q24.33 | Non-Obstructive Azoospermia | AR | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
PIWIL2 | CT80; HILI | 8p21.3 | Sertoli-cell only | AR | Isolated infertility | Azoospermia | 3 | Limited | Download | Houston et al. 2021 |
PIWIL4 | HIWI2; MIWI2; FLJ36156; PIWI | 11q21 | Non-obstructive Azoospermia | AR | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
PKD1 | PBP; PC1; Pc-1; TRPP1; polycystin-1 | 16p13.3 | Polycystic kidney disease and asthenozoospermia; OMIM:173900 | AD | Syndromic infertility | Oligozoospermia, asthenozoospermia | 11.25 | Moderate | Download | Houston et al. 2021 |
PKD1 | PBP; PC1; Pc-1; TRPP1; polycystin-1 | 16p13.3 | Polycystic kidney disease and azoospermia; OMIM:173900 | AD | Syndromic infertility | Azoospermia | 7.5 | Limited | Download | Houston et al. 2021 |
PLA2G6 | 22q13.1 | Asthenozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
PLCZ1 | NYD-SP27, PLCzeta | 12p12.3 | Fertilization failure; OMIM:617214 | AR | Isolated infertility | Normozoospermia | 16 | Definitive | Download | Houston et al. 2021 |
PLEKHA5 | 12p12.3 | Kallmann syndrome; OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 2 | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
PLK4 | 4q28.1 | Azoospermia; OMIM:NA (PS258150) | AD | Isolated infertility | Azoospermia | 7 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
PLOD1 | LLH, LH, LH1, | 1p36.22 | Male infertility | AR | Isolated infertility | Unclear | N/A | Unable to classify | Download | Houston et al. 2021 |
PLXNA1 | PLXN1, NOVP | 3q21.3 | Kallmann syndrome; OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | 13.5 | Strong | Download | Houston et al. 2021 |
PLXNB1 | 3p21.31 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
PMFBP1 | STAP; SPGF31 | 16q22.2 | Acephalic spermatozoa; OMIM:618112 | AR | Isolated infertility | Asthenoteratozoospermia | 14 | Strong | Download | Houston et al. 2021 |
PNPLA6 | NTE | 19p13.2 | Kallmann syndrome | AR | Reproductive system syndrome/endocrine disorder | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
POLG | N/A | 15q26.1 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
POLR3A | N/A | 10q22.3 | Kallmann syndrome; OMIM:NA (PS147950) | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
POLR3B | 12q23.3 | Isolated hypogonadotropic hypogonadism; OMIM:NA (PS147950) | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 2 | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
POR | 7q11.23 | Testicular regression syndrome | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
POU1F1 | GHF-1; GHF1; POU1F1a; PIT-1; PIT1; CPHD1; | 3p11.2 | Combined Pituitary Hormone Deficiency; OMIM:613038 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, severe oligozoospermia | 16 | Definitive | Download | Houston et al. 2021 |
POU3F2 | 6q16.1 | Hypogonadotropic hypogonadism | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
PPP1CC | 12q24.11 | Testicular failure | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
PPP2R3C | C14orf10; G4-1; G5PR; FLJ20644; SPGF36; GDRM; | 14q13.2 | Teratozoospermia | AD | Isolated infertility | Asthenoteratozoospermia | 2.75 | Limited | Download | Houston et al. 2021 |
PRDM9 | 5p14.2 | Non-obstructive azoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
PRKAR1A | 17q24.2 | Carney complex with oligoteratozoospermia or azoospermia | AD | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
PRM1 | 16p13.13 | Oligozoospermia or azoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
PRM2 | CT94.2 | 16p13.13 | Oligozoospermia or azoospermia | Undetermined | Isolated infertility | Azoospermia, oligozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
PRM2 | CT94.2 | 16p13.13 | Teratozoospermia | Undetermined | Isolated infertility | Teratozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
PRM3 | 16p13.13 | Oligozoospermia or azoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
PROK2 | PK2, BV8 | 3p13 | Kallmann syndrome; OMIM:610628 | AR | Reproductive system syndrome/endocrine disorder | No semen | 11.5 | Moderate | Download | Houston et al. 2021 |
PROKR2 | GPR73L1, PRK2 | 20p12.3 | Kallmann syndrome; OMIM:244200 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 17 | Definitive | Download | Houston et al. 2021 |
PROP1 | N/A | 5q35.3 | Pituitary hormone deficiency; OMIM:262600 | AR | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 17 | Definitive | Download | Houston et al. 2021 |
PSMC3IP | 17q21.2 | Azoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia | 5 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
PTN | 7q33 | Hypospadias | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
PTPN11 | 12q24.13 | Cryptorchidism | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
PUM2 | 2p24.1 | Spermatogenic failure | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
PYGO2 | NA | 1q21.3 | Oligozoospermia or azoospermia | AD | Isolated infertility | Azoospermia, oligozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
QRICH2 | N/A | 17q25.1 | Azoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
QRICH2 | N/A | 17q25.1 | Multiple morphological abnormalities of the sperm flagella; OMIM:618341 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 12 | Moderate | Download | Houston et al. 2021 |
RAD21L1 | 20p13 | Non-obstructive azoospermia due to Sertoli cell only and meiotic arrest | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
RAF1 | NA | 3p25.2 | Cryptorchidism | AD | Isolated infertility | Normozoospermia | 3.5 | Limited | Download | Houston et al. 2021 |
RB1 | PPP1R130; P110-RB1; P105-Rb; Pp110; PRb; RB; OSRC; | 13q14.2 | Azoospermia | AR | Isolated infertility | Azoospermia, severe oligozoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
RBMX | Xq26.3 | Non-obstructive azoospermia | XL | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
RBMXL2 | HNRNPGT | 11p15.4 | Non-obstructive azoospermia; OMIM:605444 | AD | Isolated infertility | Azoospermia | 4.5 | Limited | Download | Houston et al. 2021 |
RBMY1A1 | Yq11.223 | Azoospermia | YL | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
RD3 | 1q32.3 | Hypogonadotropic hypogonadism and Kallmann syndrome | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
REC8 | REC8L1 | 14q12 | Azoospermia; OMIM:NA (PS258150) | AD | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
RELN | 7q22.1 | Isolated Hypogonadotropic hypogonadism; OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 3 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
RHOXF1 | Xq24 | Severe oligozoospermia | XL | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
RHOXF2 | Xq24 | Severe oligozoospermia | XL | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
RHOXF2B | Xq24 | Severe oligozoospermia | XL | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
RNF17 | 13q12.12 | Non-obstructive azoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
RNF212 | ZHP3, FLJ38841 | 4p16.3 | Non-obstructive azoospermia with meiotic arrest | AR | Isolated infertility | Azoospermia | 7 | Limited | Download | Houston et al. 2021 |
RNF220 | 1p34.1 | Small-headed sperm; OMIM: NA (PS258150) | AR | Isolated infertility | Teratozoospermia: Small-headed sperm | 5 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
RNF8 | hRNF8 | 6p21.2 | Non-obstructive azoospermia, OMIM gene 611685 | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
ROBO3 | 11q24.2 | Hypogonadotropic Hypogonadism | AR | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
ROCK1 | 18q11.1 | 46,XX Differences of Sex Development | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
RPL10L | RPL10_5_1358 | 14q21.2 | Severe oligozoospermia; no OMIM ID | AR | Isolated infertility | Oligozoospermia | 5.5 | Limited | Download | Houston et al. 2021 |
RSPH1 | 21q22.3 | Primary ciliary dyskinesia; OMIM:615481 | AR | Syndromic infertility | Asthenoteratozoospermia | 6 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
RSPH3 | RSHL2, RSP3 | 6q25.3 | Primary ciliary dyskinesia; OMIM:616481 | AR | Syndromic infertility | Asthenoteratozoospermia | 10.25 | Moderate | Download | Houston et al. 2021 |
RSPH9 | MRPS18AL1; C6orf206; CILD12; FLJ30845; | 6p21.1 | Primary ciliary dyskinesia; OMIM:612650 | AR | Syndromic infertility | Asthenoteratozoospermia | 7.5 | Limited | Download | Houston et al. 2021 |
RSPO1 | FLJ40906, RSPO | 1p34.3 | Palmoplantar hyperkeratosis with squamous cell carcinoma of skin and sex reversal; OMIM:610644 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia | 12 | Moderate | Download | Houston et al. 2021 |
RXFP2 | GPR106, GREAT, INSL3R, LGR8, LGR8.1, RXFPR2 | 13q13.1 | Cryptorchidism; OMIM:NA (PS258150) | AR | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 7 | Limited | Download | Houston et al. 2021 |
SALL4 | DRRS, HSAL4, ZNF797 | 20q13.2 | Non-obstructive azoospermia | AD | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
SBF1 | 22q13.33 | Testicular failure | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
SCAPER | N/A | 15q24.3 | Bardet-Biedl syndrome with infertility; OMIM:NA (PS209900) | AR | Syndromic infertility | Azoospermia | 6.5 | Limited | Download | Houston et al. 2021 |
SDHA | 5p15.33 | Azoospermia and oligozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SDHB | 1p36.13 | Azoospermia and oligozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SDHC | 1q23.3 | Azoospermia and oligozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SDHD | 11q23.1 | Azoospermia and oligozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SECISBP2 | 9q22.2 | Selenoprotein deficiency disorder; OMIM:NA | AR | Syndromic infertility | Azoospermia | 7 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
SEMA3A | SEMAD, COLL1, SEMAL | 7q21.11 | Kallmann syndrome; OMIM:614897 | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | 16 | Definitive | Download | Houston et al. 2021 |
SEMA3E | KIAA0331; SEMAH; | 7q21.11 | Kallmann syndrome | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
SEMA4D | 9q22.2 | Hypogonadotropic Hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
SEMA7A | JMH; CD108; SEMAL; CDw108; SEMAK1; H-Sema-L; H-SEMA-K1 | 15q24.1 | Kallmann syndrome; OMIM:NA (PS147950) | Undetermined | Reproductive system syndrome/endocrine disorder | Unclear | N/A | Unable to classify | Download | Houston et al. 2021 |
SEMA7A | JMH; CD108; SEMAL; CDw108; SEMAK1; H-Sema-L; H-SEMA-K1 | 15q24.1 | Hypogonadotropic Hypogonadism | Undetermined | Reproductive system syndrome/endocrine disorder | Unclear | N/A | Unable to classify | Download | Houston et al. 2021 |
SEMG1 | 20q13.12 | Asthenozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SEMG2 | 20q13.12 | Asthenozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SEPTIN12 | SPGF10, SEPT12; OMIM: 611562 | 16p13.3 | Multiple morphological abnormalities of the sperm flagella; OMIM:614822 | AD | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 11.5 | Moderate | Download | Houston et al. 2021 |
SEPTIN12 | SPGF10, SEPT12; OMIM: 611562 | 16p13.3 | Non-obstructive azoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction |
SEPTIN14 | SEPT14 | 7p11.2 | Teratozoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Teratozoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
SERPINA5 | 14q32.13 | Azoospermia and teratozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SIN3A | 15q24.2 | Azoospermia | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SLC10A7 | 4q31.22 | Hypogonadotropic hypogonadism | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
SLC26A3 | 7q22.3-q31.1 | Congenital chloride diarrhea; OMIM:214700 | AR | Syndromic infertility | Oligoasthenoteratozoospermia | 5 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
SLC26A8 | 6p21.31 | Asthenozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SLC34A2 | 4p15.2 | Testicular Microlithiasis | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SLC9A3 | NHE3; DIAR8; NHE-3 | 5p15.33 | Congential bilateral absence of the vas deferens, OMIM gene 182307 | AR | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
SLC9C1 | 3q13.2 | Asthenozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SLIT2 | 4p15.31 | Isolated hypogonadotropic hypogonadism (normosmic); OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 2 | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SOHLH1 | 9q34.3 | Non-obstructive azoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SON | SON3; BASS1; DBP-5; NREBP; TOKIMS; C21orf50 | 21q22.11 | Non-obstructive azoospermia, OMIM gene 182465 | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
SOS1 | 2p22.1 | Cryptorchidism; OMIM:NA (PS258150) | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 4 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
SOX10 | DOM, PCWH, WS2E, WS4, WS4C | 22q13.1 | Kallmann syndrome; OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 16 | Definitive | Download | Houston et al. 2021 |
SOX10 | DOM, PCWH, WS2E, WS4, WS4C | 22q13.1 | Non-obstructive azoospermia | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
SOX10 | DOM, PCWH, WS2E, WS4, WS4C | 22q13.1 | Isolated normosmic hypogonadotropic hypogonadism, OMIM gene 602229 | AD | Reproductive system syndrome/endocrine disorder | Unclear | 3 | Limited | Download | Houston et al. 2021 |
SOX2 | N/A | 3q26.33 | Isolated hypogonadotropic hypogonadism (normosmic); OMIM:NA (PS147950) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 16 | Definitive | Download | Houston et al. 2021 |
SOX3 | N/A | Xq27.1 | 46,XX Differences of Sex Development (Prader scale 4; 5 or 6); OMIM:NA | XL | Reproductive system syndrome/endocrine disorder | Azoospermia | 13 | Strong | Download | Houston et al. 2021 |
SOX3 | N/A | Xq27.1 | Isolated Hypogonadotropic hypogonadism; OMIM:NA (PS147950) | XL | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 4.75 | Limited | Download | Houston et al. 2021 |
SOX5 | N/A | 12p12.1 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AD | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
SOX8 | SRY-Box 8 | 16p13.3 | Azoospermia; OMIM:NA (PS258150) or oligozoospermia; OMIM:NA (PS258150) | AD | Isolated infertility | Azoospermia, oligozoospermia | 4 | Limited | Download | Houston et al. 2021 |
SOX9 | SRA1; SRXY10; CMPD1; SRXX2; CMD1; SOX9; | 17q24.3 | 46,XX Differences of Sex Development (Prader scale 4; 5 or 6); OMIM:NA | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
SOX9 | SRA1; SRXY10; CMPD1; SRXX2; CMD1; SOX9; | 17q24.3 | 46,XY Differences of Sex Development (Prader scale 4; 5 or 6); OMIM:NA | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | 13.5 | Strong | Download | Houston et al. 2021 |
SPACA1 | 6q15 | Globozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SPACA3 | 17q11.2 | Infertility | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SPAG16 | 2q34 | Asthenozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SPAG17 | 1p12 | Asthenozoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Asthenozoospermia | 4 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
SPAG6 | pf16; CT141; FAP194; CFAP194; Repro-SA-1 | 10p12.2 | Primary ciliary dyskinesia with asthenoteratozoospermia; OMIM:NA (PS244400) | AR | Syndromic infertility | Asthenoteratozoospermia | 7.5 | Limited | Download | Houston et al. 2021 |
SPATA16 | NYD-SP12, SPGF6 | 3q26.31 | Globozoospermia; OMIM:102530 | AR | Isolated infertility | Teratozoospermia: globozoospermia | 8 | Limited | Download | Houston et al. 2021 |
SPATA17 | 1q41 | Non-obstructive azoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SPATA33 | 16q24.3 | Non-obstructive azoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SPEF2 | KPL2; CT122; SPGF43 | 5p13.2 | Multiple morphological abnormalities of the sperm flagella; OMIM:618751 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 14.75 | Strong | Download | Houston et al. 2021 |
SPEF2 | KPL2; CT122; SPGF43 | 5p13.2 | Primary ciliary dyskinesia with multiple morphological abnormalities of the sperm flagellum; OMIM:618751 | AR | Syndromic infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 12 | Moderate | Download | Houston et al. 2021 |
SPINK2 | 4q12 | Non-obstructive azoospermia; OMIM:NA | AR | Isolated infertility | Azoospermia | 7 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
SPO11 | 20q13.31 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia | 5 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
SPRY2 | 13q31.1 | 46,XX Differences of Sex Development | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SPRY4 | N/A | 5q31.3 | Hypogonadotropic Hypogonadism; OMIM:615266 | Undetermined | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
SPRY4 | N/A | 5q31.3 | Kallmann syndrome; OMIM:615266 | Undetermined | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
SRA1 | 5q31.3 | Isolated Hypogonadotropic hypogonadism; OMIM:NA (PS147950) | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 3 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
SRD5A2 | N/A | 2p23.1 | 46,XY Differences of Sex Development (Prader scale 4; 5 or 6); OMIM:264600 | AR | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 17 | Definitive | Download | Houston et al. 2021 |
SRY | NA | Yp11.2 | 46,XX Differences of Sex Development (Prader scale 4; 5 or 6); OMIM:400045 | YL | Reproductive system syndrome/endocrine disorder | Azoospermia | 17 | Definitive | Download | Houston et al. 2021 |
SRY | NA | Yp11.2 | 46,XY Differences of Sex Development (Prader scale 4; 5 or 6); OMIM:400044 | YL | Reproductive system syndrome/endocrine disorder | Azoospermia | 17 | Definitive | Download | Houston et al. 2021 |
SRY | Yp11.2 | Isolated oligoasthenoteratozoospermia or azoospermia; OMIM:NA (PS258150) | YL | Isolated infertility | Oligoasthenoteratozoospermia, azoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
STAG3 | - | 7q22.1 | Non-obstructive Azoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia | 11.5 | Moderate | Download | Houston et al. 2021 |
STAR | N/A | 8p11.23 | Lipoid adrenal hyperplasia; OMIM:201710 | AR | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 10 | Moderate | Download | Houston et al. 2021 |
STK36 | 2q35 | Primary ciliary dyskinesia; OMIM:NA (PS244400) | AR | Syndromic infertility | Asthenoteratozoospermia | 6 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
STRA8 | 7q33 | Non-obstructive azoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
STRC | 15q15.3 | Asthenozoospermia with deafness | AR | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
STS | Xp22.31 | Hypogonadotropic hypogonadism | XL | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
STX2 | 12q24.33 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia | 5 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
STYX | 14q22.1 | Testicular failure | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
SUN5 | SPAG4L, SPGF16, TSARG4, dJ726C3.1 | 20q11.21 | Acephalic sperm; OMIM:617187 | AR | Isolated infertility | Teratozoospermia: Acephalic sperm | 16.75 | Definitive | Download | Houston et al. 2021 |
SYCE1 | CT76; POF12; SPGF15; C10orf94 | 10q26.3 | Non-obstructive azoospermia; OMIM:616950 | AR | Isolated infertility | Azoospermia | 8.25 | Limited | Download | Houston et al. 2021 |
SYCE1L | NA | 16q23.1 | Non obstructive azoospermia | AR | Isolated infertility | Azoospermia, oligozoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
SYCP2 | SCP2; HsSCP2; SPGF1; | 20q13.33 | Severe Oligozoospermia; OMIM:258150 | AD | Isolated infertility | Azoospermia, severe oligozoospermia | 10.75 | Moderate | Download | Houston et al. 2021 |
SYCP3 | SCP3, RPRGL4, SPGF4, SCP-3, COR1 | 12q23.2 | Non-obstructive azoospermia; OMIM:270960 | AD | Isolated infertility | Azoospermia | 14 | Strong | Download | Houston et al. 2021 |
TAC3 | 12q13.3 | Kallmann syndrome; OMIM:614839 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia, oligozoospermia | 7 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
TACR3 | NK3R, HH11, NK3, NKR | 4q24 | Kallmann syndrome; OMIM:614840 | AR | Reproductive system syndrome/endocrine disorder | Azoospermia | 16.5 | Definitive | Download | Houston et al. 2021 |
TAF4B | TAFII105; TAF2C2; SPGF13; | 18q11.2 | Non-obstructive azoospermia; OMIM:615841 | AR | Isolated infertility | Azoospermia | 6.5 | Limited | Download | Houston et al. 2021 |
TAF7L | Xq22.1 | Azoospermia | XL | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
TBPL1 | 6q23.2 | Testicular failure | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
TDRD6 | 6p12.3 | Oligoasthenoteratozoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Oligoasthenoteratozoospermia | 5 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
TDRD7 | NA | 9q22.33 | Cataract with non-obstructive azoospermia; OMIM:613887 | AR | Syndromic infertility | Azoospermia | 8 | Limited | Download | Houston et al. 2021 |
TDRD9 | 14q32.33 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Azoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
TEKT2 | 1p34.3 | Asthenozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
TEP1 | TP1; TLP1; p240; TROVE1; VAULT2 | 14q11.2 | Non-obstructive azoospermia, OMIM gene 601686 | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
TEX101 | SGRG; TES101RP | 19q13.31 | Sperm migration failure in the oviduct; OMIM: 612665; unexplained infertility | AR | Isolated infertility | Unclear | ≤2 | No evidence | Download | Houston et al. 2021 |
TEX11 | MZIP4, SPGFX2, Spo22, TGC1, TSGA3, ZIP4 | Xp11 | Non-obstructive azoospermia; OMIM:309120 | XL | Isolated infertility | Azoospermia, oligozoospermia | 16 | Definitive | Download | Houston et al. 2021 |
TEX13A | Xq22.3 | Azoospermia | XL | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
TEX13B | Xq22.3 | Azoospermia | XL | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
TEX14 | N/A | 17q22 | Non-obstructive azoospermia; OMIM:617707 | AR | Isolated infertility | Azoospermia | 10.5 | Moderate | Download | Houston et al. 2021 |
TEX15 | CT42; SPGF25 | 8p12 | Non-obstructive azoospermia; OMIM:617960 | AR | Isolated infertility | Azoospermia, oligozoospermia | 13.5 | Strong | Download | Houston et al. 2021 |
TLE4 | 9q21.31 | Hypogonadotropic hypogonadism | AD | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
TNP1 | 2q35 | Oligozoospermia or varicocele | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
TNP2 | TP2 | 16p13.13 | Oligozoospermia or azoospermia, OMIM gene 190232 | AR | Isolated infertility | Azoospermia, oligozoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
TP53 | BMFS5, TRP53, BCC7 | 17p13.1 | Non-obstructive azoospermia; OMIM: 191170 | AD | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
TP53BP1 | 53BP1; TDRD30; P53BP1; P202; | 15q15.3 | Non-obstructive Azoospermia | AR | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
TP63 | AIS; KET; LMS; NBP; RHS; p40; p51; p63; EEC3; OFC8; p73H; p73L; SHFM4; TP53L; TP73L; p53CP; TP53CP; B(p51A); B(p51B) | 3q28 | Male infertility (azoo/oligo/terato/asthenozoospermia) OMIM gene 603273 | AD | Isolated infertility | Oligoasthenoteratozoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
TP73 | P73; TRP73 | 1p36.32 | Non-obstructive azoospermia; OMIM:601990 | AD | Isolated infertility | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
TRAPPC9 | 8q24.3 | Hypogonadotropic hypogonadism and Kallmann syndrome | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
TRIM37 | MUL, POB1, TEF3 | 17q22 | Mulibrey nanism; OMIM:253250 | AR | Syndromic infertility | Azoospermia, severe oligozoospermia | 10 | Moderate | Download | Houston et al. 2021 |
TSC22D3 | Xq22.3 | Sertoli cell only syndrome | XL | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
TSGA10 | SPGF26, CT79 | 2q11.2 | Acephalic spermatozoa; OMIM:617961 | AR | Isolated infertility | Teratozoospermia: acephalic sperm | 10.25 | Moderate | Download | Houston et al. 2021 |
TSPAN11 | 12p11.21 | Hypogonadotropic hypogonadism and Kallmann syndrome | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
TSPY1 | Yp11.2 | Male infertility | YL | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
TSPYL1 | 6q22.1 | Azoospermia/Disorder of Sex Development | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
TSPYL5 | 8q22.1 | Azoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
TSSK1B | N/A | 5q22.2 | Asthenoteratozoospermia; OMIM:NA (PS258150) | Undetermined | Isolated infertility | Asthenoteratozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
TSSK2 | 22q11.21 | Male infertility | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
TSSK4 | 14q12 | Azoospermia and oligozoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
TTC12 | TPARM; FLJ13859; FLJ20535; CILD45; | 11q23.2 | Primary ciliary dyskinesia; OMIM:618801 | AR | Syndromic infertility | Asthenoteratozoospermia: IDA and ODA defects | 5.5 | Limited | Download | Houston et al. 2021 |
TTC21A | SPGF37, IFT139A, STI2 | 3p22.2 | Multiple morphological abnormalities of the sperm flagella; OMIM:611430 | AR | Isolated infertility | Asthenoteratozoospermia | 6.5 | Limited | Download | Houston et al. 2021 |
TTC29 | NYD-SP14; SPGF42; TBPP2A; | 4q31.22 | Multiple morphological abnormalities of the sperm flagella; OMIM:618745 | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 14.5 | Strong | Download | Houston et al. 2021 |
TTLL5 | 14q24.3 | Cone-rod degeneration with spermatogenic failure; OMIM:615860 | AR | Syndromic infertility | Asthenozoospermia, azoospermia | 7 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
TYRO3 | 15q15.1 | Hypogonadotropic hypogonadism | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
UBE2B | 5q31.1 | Oligozoospermia; OMIM:NA (PS258150) | AR | Isolated infertility | Oligozoospermia | 5 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
UBR2 | 6p21.1 | Non-obstructive azoospermia; OMIM:NA (PS258150) | AD | Isolated infertility | Azoospermia | 8 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
UHRF1 | Np95; hNP95; ICBP90; RNF106; TDRD22; hUHRF1; huNp95 | 19p13.3 | Oligozoospermia, OMIM gene 607990 | Undetermined | Isolated infertility | Oligozoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
USP1 | 1p31.3 | Non-obstructive azoospermia | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
USP26 | NA | Xq26.2 | Azoospermia or oligozoospermia; OMIM:NA (PS258150) | XL | Isolated infertility | Azoospermia, oligozoospermia | 9.5 | Moderate | Download | Houston et al. 2021 |
USP9Y | Yq11.221 | Azoospermia | YL | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
UTP14C | 13q14.3 | Azoospermia and oligozoospermia | AR | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
VAMP7 | Xq28 and Yq12 | 46,XY Differences of Sex Development (Prader scale 4; 5 or 6); OMIM:NA (PS400044) | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 6 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
WBP2NL | PAWP | 22q13.2 | Fertilization failure; OMIM:NA (PS258150) | AR | Isolated infertility | Normozoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
WDR11 | N/A | 10q26.12 | Hypogonadotropic hypogonadism; OMIM:614858 | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 12 | Moderate | Download | Houston et al. 2021 |
WDR11 | N/A | 10q26.12 | Kallmann syndrome; OMIM:614858 | AD | Reproductive system syndrome/endocrine disorder | Normozoospermia, oligozoospermia, azoospermia | 11 | Moderate | Download | Houston et al. 2021 |
WDR19 | IFT144; KIAA1638; NPHP13; FAP66; ORF26; FLJ23127; PWDMP; SRTD5; ATD5; CED4; | 4p14 | Multiple morphological abnormalities of the sperm flagella; OMIM:NA (PS258150) | AR | Isolated infertility | Asthenoteratozoospermia: Multiple morphological abnormalities of the sperm flagella | 3.5 | Limited | Download | Houston et al. 2021 |
WNK3 | PRKWNK3, KIAA1566 | Xp11.22 | Azoospermia | XL | Isolated infertility | Azoospermia | 3 | Limited | Download | Houston et al. 2021 |
WNT4 | NA | 1p36.12 | 46,XX Differences of Sex Development | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
WT1 | NPHS4; WIT-2; AWT1; WAGR; WT33; GUD; | 11p13 | 46,XY Differences of Sex Development (Prader scale 4; 5 or 6) without Wilm's tumor; OMIM:NA (PS400044) | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | 14.25 | Strong | Download | Houston et al. 2021 |
WTAP | 6q25.3 | Hypospadias | AD | N/A | N/A | N/A | No evidence | N/A | Oud et al. 2019 Human Reproduction | |
XRCC1 | RCC; SCAR26 | 19q13.31 | Non-obstructive azoospermia, OMIM gene 194360 | Undetermined | Isolated infertility | Azoospermia | N/A | Unable to classify | Download | Houston et al. 2021 |
XRCC2 | FANCU, RAD51-Like | 7q36.1 | Non-obstructive azoospermia; OMIM: 617247 | AR | Isolated infertility | Azoospermia | 10 | Moderate | Download | Houston et al. 2021 |
YBX2 | 17p13.1 | Azoospermia and oligozoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
ZFPM2 | ZNF89B; HFOG-2; FOG2; SRXY9; DIH3; | 8q23 | 46,XY Sex reversal | AD | Reproductive system syndrome/endocrine disorder | Azoospermia | ≤2 | No evidence | Download | Houston et al. 2021 |
ZFX | Xp22.11 | Oligozoospermia; OMIM:NA (PS258150) | XL | Isolated infertility | Oligozoospermia | 4.75 | Limited | Download | Houston et al. 2021 | |
ZMYND15 | 17p13.2 | Non-obstructive azoospermia; OMIM: 615842 | AR | Isolated infertility | Azoospermia | 4 | Limited | N/A | Oud et al. 2019 Human Reproduction | |
ZNF214 | 11p15.4 | Azoospermia and severe oligozoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
ZNF215 | 11p15.4 | Azoospermia and severe oligozoospermia | Undetermined | N/A | N/A | N/A | Unable to classify | N/A | Oud et al. 2019 Human Reproduction | |
ZPBP | ZPBP1, SP38 | 7p12.2 | Globozoospermia, OMIM:NA (PS258150) | AR | Isolated infertility | Teratozoospermia: globozoospermia | 6.5 | Limited | Download | Houston et al. 2021 |
HPO DECISION TREE – WYRWOLL et AL 2023
Overview of the Human Phenotype Ontology (HPO) terms in the context of non-syndromic male infertility. The starting point for our work is the term “Decreased male fertility” with all further terms stemming from this term. Overall, 34 phenotypes can be diagnosed through semen analysis, 11 through testicular biopsy, and the 2 terms “Gonadal dysgenesis” and “Hypogonadotropic hypogonadism” can be suspected based on the patient’s history and confirmed by clinical work-up. These terms describe syndromic conditions, and, therefore, were not followed up further. CBAVD, congenital bilateral absence of the vas deferens; MMAF, multiple morphological abnormalities of the sperm flagella; SCO, Sertoli cell-only phenotype.
*These terms were not followed up further in our analysis.
HPO TERMS and ASSOCIATED SEMEN AND TESTICULAR PHENOTYPES – WYRWOLL et AL 2023
Overview of selected examples of Human Phenotype Ontology (HPO) terms and the corresponding schematic phenotypes. Additional HPO terms, for example, branching from “Abnormal sperm morphology”, are not depicted here. Abnormal sperm morphology can be a cause of abnormal sperm motility.
MMAF: multiple morphological abnormalities of the sperm flagella; SCO: Sertoli cell-only phenotype.